clustalw /align /type=dna /infile=bcas.fasta /output=fasta /outfile=out.fasta >z
clustalw /tree /infile=out.fasta > z
del z

sed "s/>/#/g" out.fasta >out.tmp
type megaheader.txt out.tmp > out.meg

del tree.nwk
rename out.ph tree.nwk

start mega4.exe out.fasta
start mega4.exe tree.nwk
start mega4.exe out.meg
