The default is to show a genomic smear or during gel electrophoresis,for DNA files with the suffix ".gen"(e.g. "DNA daughter.gen").  To change this so that the default is to not show the smear, change the "Show genomic smear?" line below. 

Show genomic smear? Yes

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For protein files, the default is to show a 'total protein' smear for protein files ending with the suffix '.tot' (e.g. "protein HIV.tot"). To change this so that the default is to not show the smear, change the "Show protein smear?" line below. 

Show protein smear? Yes

Note that when the smear is present, a slider will appear enabling you to adjust the opacity of the smear. 

Enter the Genbank URL in the line below (do not put anything but the URL itself in this line):
http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?db=Nucleotide

Enter the NCBI home page URL in the line below (do not put anything but the URL itself in this line):
http://www.ncbi.nlm.nih.gov/

Enter the NCBI nucleotide blast URL in the line below (do not put anything but the URL itself in this line):
http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Nucleotides&PROGRAM=blastn&SHOW_DEFAULTS=on&DATABASE=nr

Enter the NCBI protein blast URL in the line below (do not put anything but the URL itself in this line):
http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&LINK_LOC=blasthome

Enter the Next Generation Biology Workbench (SWAMI) URL in the line below (do not put anything but the URL itself in this line):
http://www.ngbw.org/

Enter the Molecular Science Student Workbench URL in the line below (do not put anything but the URL itself in this line):
http://bsw-uiuc.net/

Enter the SNP database URL in the line below (do not put anything but the URL itself in this line):
http://www.ncbi.nlm.nih.gov/SNP/

Enter the OMIM database URL in the line below (do not put anything but the URL itself in this line):
http://www.ncbi.nlm.nih.gov/omim

Enter the Case It home page URL in the line below (do not put anything but the URL itself in this line):
http://www2.uwrf.edu/caseit/

Enter the MEGA home page URL in the line below (do not put anything but the URL itself in this line):
http://www.megasoftware.net/

Enter the MEGA tutorial URL in the line below (do not put anything but the URL itself in this line):
http://caseit.uwrf.edu

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Differential display option the default? No

If the above is Yes, then individual fragments will be faint so that it is easier to see fragments stacked on top of one another, simulating increased density for stacked DNA fragments. If the above is no, it is not as easy to see stacked fragments because their is a darkness gradient from left to right (i.e. larger fragments are darker).







